Merge pull request #272 from LCSB-BioCore/dependabot/github_actions/actions/checkout-5

Bump actions/checkout from 4 to 5

Author: exaexa

.github/workflows/ci.yml

@@ -24,7 +24,7 @@ jobs:
         arch:
           - x64
     steps:
-      - uses: actions/checkout@v4
+      - uses: actions/checkout@v5
       - uses: julia-actions/setup-julia@v2
         with:
           version: ${{ matrix.version }}

.github/workflows/docs.yml

@@ -14,7 +14,7 @@ jobs:
   build:
     runs-on: ubuntu-latest
     steps:
-      - uses: actions/checkout@v4
+      - uses: actions/checkout@v5
       - uses: julia-actions/setup-julia@v2
       - uses: julia-actions/cache@v2
       - name: Install dependencies

.github/workflows/pr-format.yml

@@ -11,7 +11,7 @@ jobs:
     runs-on: ubuntu-latest
     steps:
       - name: Clone the repository
-        uses: actions/checkout@v4
+        uses: actions/checkout@v5
       - name: Checkout the pull request code # this checks out the actual branch so that one can commit into it
         if: github.event_name == 'issue_comment'
         env:

Project.toml

@@ -16,7 +16,7 @@ ConstructionBase = "1.3"
 DocStringExtensions = "0.8, 0.9"
 IfElse = "0.1"
 SBML_jll = "5.19.5"
-Symbolics = "5"
+Symbolics = "5,6"
 Unitful = "1"
 julia = "1.6"
 

test/loaddynamicmodels.jl

@@ -85,6 +85,7 @@ sbmlfiles = [
 @testset "Loading of models from sbml_test_suite" begin
     for (sbmlfile, url, hash, converter, expected_par, expected_rxn, expected_u0) in
         sbmlfiles
+
         if !isfile(sbmlfile)
             Downloads.download(url, sbmlfile)
         end

test/loadmodels.jl

@@ -380,11 +380,10 @@ end
     @test test_math.args[1].args[2].id == "S1"
     @test test_math.args[2].id == "time"
 
-    test_math =
-        readSBML(
-            joinpath(@__DIR__, "data", "01565-sbml-l3v1.xml"),
-            libsbml_convert("expandInitialAssignments"),
-        ).reactions["J31"].kinetic_math
+    test_math = readSBML(
+        joinpath(@__DIR__, "data", "01565-sbml-l3v1.xml"),
+        libsbml_convert("expandInitialAssignments"),
+    ).reactions["J31"].kinetic_math
 
     @test test_math.args[2].fn == "sin"
     @test test_math.args[2].args[1].val == 2.1