reduce examples to single-core

Author: msuchard

NEWS.md

@@ -4,7 +4,7 @@ Changes:
   1. Update to BEAST X 'hmc-clock' to patch gradients
   2. Add custom spell-check dictionary
   3. Update copyright year
-
+  4. Reducce CPU vs elapsed time in examples
 
 BeastJar v10.5.0
 ================

R/BeastJar.R

@@ -38,7 +38,7 @@
 #'   joint$add(rJava::.jcast(model, "dr.inference.model.Likelihood"))
 #'   joint$add(rJava::.jcast(dummy, "dr.inference.model.Likelihood"))
 #'
-#'   joint <- rJava::new(rJava::J("dr.inference.model.CompoundLikelihood"), joint)
+#'   joint <- rJava::new(rJava::J("dr.inference.model.CompoundLikelihood"), 1L, joint)
 #'
 #'   # Specify auto-adapting random-walk Metropolis-Hastings transition kernel
 #'   operator <- rJava::.jnew("dr.inference.operators.RandomWalkOperator",

cran-comments.md

@@ -2,8 +2,12 @@
 
 * This submission packages the latest release of the popular phylogenetics
   software BEAST X to make it available to R users
+  
+* Fixed 2 NOTEs:
+  - added 'Baele' to custom spell-check dictionary
+  - reduced multi-core CPU usage in examples to single core
 
-* occasional NOTE: installed size is  7.8Mb
+* Remains occasional NOTE: installed size is  7.8Mb
   - We are aware the package size exceeds the maximum. We have tried our
     best to reduce the size, for example by dropping code normally used
     for a graphical user interface. However, we cannot reduce the size