Repositories list

• BioTutorials

  Public

  BioJulia/BioTutorials’s past year of commit activity
  Tutorial Notebooks of BioJulia

  julia

  Jupyter Notebook

  •8•38•5•3•Updated Feb 11, 2026Feb 11, 2026

• BufferIO.jl

  Public

  BioJulia/BufferIO.jl’s past year of commit activity
  The buffer is the interface

  Julia

  •

  MIT License

  •0•20•6•1•Updated Feb 10, 2026Feb 10, 2026

• CIGARStrings.jl

  Public

  BioJulia/CIGARStrings.jl’s past year of commit activity
  Read and write Concise Idiosyncratic Gapped Alignment Reports.

  Julia

  •

  MIT License

  •0•1•1•0•Updated Feb 10, 2026Feb 10, 2026

• MemoryViews.jl

  Public

  BioJulia/MemoryViews.jl’s past year of commit activity
  Simple, low-level views into memory in Julia

  Julia

  •

  MIT License

  •1•23•1•1•Updated Feb 9, 2026Feb 9, 2026

• BioStructures.jl

  Public
  A Julia package to read, write and manipulate macromolecular structures

  bioinformaticsbiologystructural-biology+ 5pdbjuliaprotein-structurestructural-bioinformaticsbiojulia

  Julia

  •

  Other

  •24•106•9•2•Updated Feb 9, 2026Feb 9, 2026

• BGZFLib.jl

  Public

  BioJulia/BGZFLib.jl’s past year of commit activity
  Read and write BGZF files

  Julia

  •

  MIT License

  •0•4•0•0•Updated Feb 2, 2026Feb 2, 2026

• biojulia.github.io

  Public
  Julia

  •

  MIT License

  •4•6•5•0•Updated Jan 29, 2026Jan 29, 2026

• posts

  Public

  BioJulia/posts’s past year of commit activity
  Blog posts for the biojulia website

  bioinformaticsbiologyjulia

  Julia

  •5•8•6•1•Updated Jan 15, 2026Jan 15, 2026

• BioJuliaTemplate.jl

  Public

  BioJulia/BioJuliaTemplate.jl’s past year of commit activity
  Template package for BioJulia

  Julia

  •

  MIT License

  •0•0•0•1•Updated Jan 13, 2026Jan 13, 2026

• SingleCellProjections.jl

  Public

  BioJulia/SingleCellProjections.jl’s past year of commit activity
  Analysis of Single Cell Expression data in Julia

  Julia

  •

  Other

  •4•24•4•2•Updated Jan 13, 2026Jan 13, 2026

• BioSequences.jl

  Public
  Biological sequences for the julia language

  bioinformaticsbiologybiological-sequences+ 1biojulia

  Julia

  •

  MIT License

  •51•162•19•7•Updated Jan 8, 2026Jan 8, 2026

• Kmers.jl

  Public
  Efficient types and methods for K-mer biosequences

  Julia

  •

  MIT License

  •7•31•3•2•Updated Jan 5, 2026Jan 5, 2026

• BED.jl

  Public

  BioJulia/BED.jl’s past year of commit activity
  bioinformaticsbed-format

  Julia

  •

  MIT License

  •7•6•3•3•Updated Dec 28, 2025Dec 28, 2025

• Automa.jl

  Public
  A julia code generator for regular expressions

  juliaregular-expression

  Julia

  •

  Other

  •16•198•9•2•Updated Dec 28, 2025Dec 28, 2025

• BioMakie.jl

  Public
  Plotting and interface tools for biology.

  Julia

  •

  MIT License

  •5•68•4•12•Updated Dec 11, 2025Dec 11, 2025

• FormatSpecimens.jl

  Public

  BioJulia/FormatSpecimens.jl’s past year of commit activity
  Biological file format specimens for testing packages, and functions to assist in testing.

  Julia

  •

  Other

  •3•15•0•0•Updated Nov 18, 2025Nov 18, 2025

• GenomicAnnotations.jl

  Public
  bioinformaticsgff3biology+ 4juliagenbankgenesgenome-annotation

  Julia

  •

  MIT License

  •4•18•1•0•Updated Nov 12, 2025Nov 12, 2025

• XAMAuxData.jl

  Public

  BioJulia/XAMAuxData.jl’s past year of commit activity
  Read auxiliary data fields in SAM, GFA and PAF formats

  Julia

  •

  MIT License

  •0•3•1•1•Updated Oct 23, 2025Oct 23, 2025

• KWayMerges.jl

  Public

  BioJulia/KWayMerges.jl’s past year of commit activity
  Implementation of k-way merge algorithms in Julia

  Julia

  •

  MIT License

  •0•4•1•1•Updated Jul 11, 2025Jul 11, 2025

• TwoBit.jl

  Public
  Support for working with 2Bit formatted sequence data files

  Julia

  •

  MIT License

  •3•11•2•1•Updated Jul 2, 2025Jul 2, 2025

• PairwiseMappingFormat.jl

  Public

  BioJulia/PairwiseMappingFormat.jl’s past year of commit activity
  Parser for the PAF format in bioinformatics

  Julia

  •

  MIT License

  •0•3•0•0•Updated Jun 16, 2025Jun 16, 2025

• Indexes.jl

  Public
  tabix

  Julia

  •

  MIT License

  •4•3•2•4•Updated Apr 27, 2025Apr 27, 2025

• XAM.jl

  Public

  BioJulia/XAM.jl’s past year of commit activity
  Parse and process SAM and BAM formatted files

  bam-filesbioinformaticssam+ 5bambiojuliasam-filessam-formatbam-format

  Julia

  •

  MIT License

  •14•29•23•5•Updated Apr 26, 2025Apr 26, 2025

• BioSymbols.jl

  Public

  BioJulia/BioSymbols.jl’s past year of commit activity
  Nucleic and amino acid primitive types

  bioinformaticsbiologycomputational-biology+ 5biological-data-analysisamino-acidsnucleotidesnucleic-acidsbiojulia

  Julia

  •

  MIT License

  •14•34•3•1•Updated Apr 25, 2025Apr 25, 2025

• ProteinSecondaryStructures.jl

  Public

  BioJulia/ProteinSecondaryStructures.jl’s past year of commit activity
  Wrapper to protein secondary structure calculation packages

  Julia

  •

  MIT License

  •1•13•0•0•Updated Apr 3, 2025Apr 3, 2025

• NCBIBlast.jl

  Public
  Thin wrapper around NCBI's BLAST+ CLI https://www.ncbi.nlm.nih.gov/books/NBK569856/

  Julia

  •

  MIT License

  •2•6•1•1•Updated Mar 10, 2025Mar 10, 2025

• BioMarkovChains.jl

  Public
  Representing biological sequences as Markov chains

  bioinformaticsbiologyjulia+ 3markov-chaindnajulialang

  Julia

  •

  MIT License

  •2•9•0•1•Updated Dec 9, 2024Dec 9, 2024

• PopGen.jl

  Public
  Population Genetics in Julia

  snpsgenomicsgenetics+ 4structurepopgenfstmicrosatellites

  Julia

  •

  MIT License

  •17•53•4•1•Updated Nov 26, 2024Nov 26, 2024

• PopGenCore.jl

  Public
  Core utilities for PopGen.jl, including the PopData type and file IO

  Julia

  •

  MIT License

  •2•6•3•0•Updated Nov 26, 2024Nov 26, 2024

• FASTX.jl

  Public

  BioJulia/FASTX.jl’s past year of commit activity
  Parse and process FASTA and FASTQ formatted files of biological sequences.

  parsingjuliabio+ 8file-formatfastafastq-formatfastqfastq-filesfasta-formatbiojulia+ 1

  Julia

  •

  MIT License

  •20•66•5•1•Updated Oct 22, 2024Oct 22, 2024