Repositories list

• EMBL-EBI-imaging-course-04-2025

  Public
  Jupyter Notebook

  •

  BSD 2-Clause "Simplified" License

  •6•6•0•0•Updated Feb 11, 2026Feb 11, 2026

• status

  Public

  ome/status’s past year of commit activity
  Status dashboard for the OME project

  statusdashboardgh-pages+ 1ome

  HTML

  •5•1•4•0•Updated Feb 11, 2026Feb 11, 2026

• upptime

  Public

  ome/upptime’s past year of commit activity
  📈 Uptime monitor and status page for OME, powered by @upptime

  uptime-monitorstatus-pageupptime

  Markdown

  •

  MIT License

  •1•1•1•1•Updated Feb 11, 2026Feb 11, 2026

• omero-documentation

  Public
  Sphinx-based documentation for the Open Microscopy Environment

  documentationomeroome

  Python

  •

  BSD 2-Clause "Simplified" License

  •51•24•29•6•Updated Feb 11, 2026Feb 11, 2026

• ome-common-java

  Public

  ome/ome-common-java’s past year of commit activity
  Java library providing common functionality for all OME Java components

  Java

  •

  Other

  •20•2•1•2•Updated Feb 10, 2026Feb 10, 2026

• presentations

  Public

  ome/presentations’s past year of commit activity
  HTML-based presentations from the OME team.

  htmlreveal-jspresentations

  HTML

  •

  Creative Commons Zero v1.0 Universal

  •19•0•0•0•Updated Feb 10, 2026Feb 10, 2026

• omero-web

  Public
  Django-based OMERO.web client

  pythonclientdjango+ 2webomero

  Python

  •39•23•136•8•Updated Feb 10, 2026Feb 10, 2026

• ome-zarr-py

  Public
  Implementation of next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.

  omezarrngff+ 1ome-zarr

  Python

  •

  Other

  •66•224•82•10•Updated Feb 9, 2026Feb 9, 2026

• omero_search_engine

  Public
  App which is used to search metadata (key-value pairs)

  Python

  •

  GNU General Public License v2.0

  •5•2•16•8•Updated Feb 9, 2026Feb 9, 2026

• omero-py

  Public
  Python project containing Ice remoting code for OMERO

  pythoncomponentlib+ 2omeroomero-py

  Python

  •

  GNU General Public License v2.0

  •35•27•56•8•Updated Feb 9, 2026Feb 9, 2026

• omero-web-apps-examples

  Public template
  Example Setup for Web Apps

  Python

  •4•1•2•10•Updated Feb 7, 2026Feb 7, 2026

• openmicroscopy

  Public

  ome/openmicroscopy’s past year of commit activity
  OME (Open Microscopy Environment) develops open-source software and data format standards for the storage and manipulation of biological light microscopy data. …

  pythonjavaimage+ 3databaseserveromero

  Java

  •

  GNU General Public License v2.0

  •104•215•23•3•Updated Feb 7, 2026Feb 7, 2026

• omero-figure

  Public
  An OMERO.web app for creating Figures from images in OMERO

  webappomero

  JavaScript

  •

  GNU Affero General Public License v3.0

  •37•19•62•10•Updated Feb 5, 2026Feb 5, 2026

• omero-cli-zarr

  Public
  omerozarrngff+ 1ome-zarr-converter

  Python

  •

  GNU General Public License v2.0

  •10•18•23•10•Updated Feb 5, 2026Feb 5, 2026

• omero-gateway-java

  Public
  Gradle project containing OMERO Java Client Library

  javaapibuild+ 5sdkcomponentgradlejaromero

  Java

  •

  GNU General Public License v2.0

  •10•1•15•2•Updated Feb 5, 2026Feb 5, 2026

• omero-blitz

  Public
  Gradle project containing Ice remoting code for OMERO

  componentserverjar+ 2libomero

  Java

  •

  GNU General Public License v2.0

  •15•0•30•1•Updated Feb 5, 2026Feb 5, 2026

• omero-server

  Public
  Gradle project containing main server logic for OMERO

  componentserverjar+ 2libomero

  Java

  •

  GNU General Public License v2.0

  •14•8•36•3•Updated Feb 5, 2026Feb 5, 2026

• omero-renderer

  Public
  Gradle project containing rendering functionality for OMERO

  componentgradlejar+ 1omero

  Java

  •

  GNU General Public License v2.0

  •10•0•2•1•Updated Feb 5, 2026Feb 5, 2026

• omero-romio

  Public
  Gradle project for the ROMIO library of OMERO

  libraryjario+ 1omero

  Java

  •

  GNU General Public License v2.0

  •13•0•3•1•Updated Feb 5, 2026Feb 5, 2026

• omero-common

  Public
  Gradle project containing common utilities for OMERO

  libraryutilomero

  Java

  •

  GNU General Public License v2.0

  •11•1•1•2•Updated Feb 5, 2026Feb 5, 2026

• omero-model

  Public
  Gradle project for generating model jar for OMERO

  librarycomponentgradle+ 3modeljaromero

  Java

  •

  GNU General Public License v2.0

  •13•0•9•0•Updated Feb 5, 2026Feb 5, 2026

• action-workflows

  Public
  2•0•0•0•Updated Feb 5, 2026Feb 5, 2026

• ngff-spec

  Public
  (EXPERIMENTAL) Investigation of splitting NGFF specifications out of ome/ngff

  Python

  •7•9•6•10•Updated Feb 5, 2026Feb 5, 2026

• ngff

  Public
  Next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.

  data-sciencecloudspec+ 2bioimagingfile-formats

  Python

  •

  Other

  •64•153•104•13•Updated Feb 5, 2026Feb 5, 2026

• www.openmicroscopy.org

  Public
  OME main website

  jekyll-siteome

  HTML

  •

  Creative Commons Attribution 4.0 International

  •26•6•15•2•Updated Feb 4, 2026Feb 4, 2026

• meeting-minutes

  Public
  Minutes from the weekly OME community meetings

  Creative Commons Attribution 4.0 International

  •6•0•1•0•Updated Feb 3, 2026Feb 3, 2026

• devspace

  Public
  Continuous integration tool for OME projects

  dockerjenkinscontinuous-integration+ 2omerodevs

  Shell

  •17•19•21•2•Updated Jan 30, 2026Jan 30, 2026

• omero-scripts

  Public
  Core OMERO Scripts

  pythonscriptsomero

  Python

  •32•14•16•1•Updated Jan 29, 2026Jan 29, 2026

• omeroweb-install

  Public
  Jinja

  •11•2•4•1•Updated Jan 29, 2026Jan 29, 2026

• omero-insight

  Public
  Gradle project containing insight java client for OMERO

  javaclientgui+ 1omero

  Java

  •

  GNU General Public License v2.0

  •13•8•123•7•Updated Jan 28, 2026Jan 28, 2026