Skip to content

How use your script to trace protein ID based on its tax ID? #25

@Xueliang24

Description

@Xueliang24

Hi, I am a PhD student and use the ncbitax2lin recently. I want to trace the proten ID with NCBI taid, I have download prot.accession2taxid and get the second column and third column (they are gene ID and tax ID), I also downloaded the RefSeq-release215.catalog, because I saw a method the two files can get the lineage information. I also tried use prot.accession2taxid and name.dmp or lineages.csv to get the information according to the FAQ. Maybe it was failed due to the format of these files?

Metadata

Metadata

Assignees

No one assigned

    Labels

    No labels
    No labels

    Projects

    No projects

    Milestone

    No milestone

    Relationships

    None yet

    Development

    No branches or pull requests

    Issue actions