v0.4.13

Pathogen v0.4.13

• Github actions based testing
• Compatibility updates
• Plot recipe deprecation fix

Diff since v0.4.12

v0.4.12

Pathogen v0.4.12

• Data augmentation performance improvements through introduction of TransmissionRateCache
• Extension of EventExtents to allow for specification of lower bounds of observation delay and latent period through use of Tuple{Float64,Float64}

Diff since v0.4.11

v0.4.11

Pathogen v0.4.11

• summary() now only outputs selected credible interval
• mode() to generate transmission network mode from a TNDistribution
• plot() recipe for degree distribution histogram for TransmissionNetworks and TNDistributions
• Generalize some transmission network functionality using new AbstractTransmissionNetwork

Diff since v0.4.10

v0.4.10

Pathogen v0.4.10

• Bugfix: involving late-epidemic exogenous transmissions
• Bugfix: error encountered sometimes during network-conditioned event time data augmentation
• Added plot() recipe for EventObservations
• Added example for a Tomato Spotted Wilt Virus experimental epidemic
• Added example of 1861 Hagelloch Measles

Diff since v0.4.9

v0.4.9

Pathogen v0.4.9

• MCMC summary() function for TN-ILM parameters

Diff since v0.4.8

v0.4.8

Pathogen v0.4.8

• Include initial states in transmission network representation
• Additional tests for transmission networks
• Bump compat for RecipesBase

Diff since v0.4.7

v0.4.7

Pathogen v0.4.7

• Support for specification of a TransmissionNetworkPrior when conducting inference

Diff since v0.4.6

v0.4.6

Pathogen v0.4.6

• Fix bug that may affect precompilation
• Performance improvements
• Compatibility updates
• README updates

Diff since v0.4.5

v0.4.5

Pathogen v0.4.5

• Generalize TNDistributions
• Code clean-up

Diff since v0.4.4

v0.4.4

Pathogen v0.4.4

• Install TagBot as Github action
• Add a hard stop on simulation time
• Improve README and add arxiv reference

Diff since v0.4.3