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@common-workflow-lab Common Workflow Language Lab

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    35 repositories

    • wdl-cwl-translator

      Public
      A translator from WDL to CWL v1.2
      wdlcwlcommonwl
      Common Workflow Language
      •
      Apache License 2.0
      •7•27•18•6•Updated Jan 19, 2026Jan 19, 2026

    • cwl-ts-auto

      Public
      Autogenerated TypeScript bindings for CWL
      TypeScript
      •
      Apache License 2.0
      •4•6•6•1•Updated Jan 3, 2026Jan 3, 2026

    • galaxy

      Public
      Fork of Galaxy (http://galaxyproject.org/) attempting to implement the CWL spec.
      bh2019europebiohackeu20
      Python
      •
      Other
      •1.1k•10•43•0•Updated Nov 19, 2025Nov 19, 2025

    • cwl-ex

      Public
      CWL experimental grammar
      JavaScript
      •0•11•3•13•Updated Nov 16, 2025Nov 16, 2025

    • ipython2cwl

      Public
      IPython2CWL is a tool for converting IPython Jupyter Notebooks to CWL Command Line Tools by simply providing typing annotation.
      dockerjupyterjupyter-notebookcommon-workflow-languagecwl
      Python
      •
      Apache License 2.0
      •7•17•4•5•Updated Nov 3, 2025Nov 3, 2025

    • cwl-cpp-auto

      Public
      Autogenerated C++ bindings for CWL
      C++
      •
      Apache License 2.0
      •2•2•3•0•Updated Dec 19, 2024Dec 19, 2024

    • cwl-d-auto

      Public
      Autogenerated classes for reading and writing CWL objects using the D language
      parserdlangcwlcommonwl
      Common Workflow Language
      •
      Apache License 2.0
      •0•3•0•0•Updated Oct 25, 2024Oct 25, 2024

    • upload-conformance-badges

      Public
      Action for uploading CWL conformance badges
      common-workflow-languagecwlcommonwl
      Apache License 2.0
      •0•0•0•0•Updated Jun 25, 2024Jun 25, 2024

    • 2020-covid-19-bh

      Public
      Coordinating the CWL workflow related to the 2020 COVID-19 BioHackathon
      Common Workflow Language
      •
      Apache License 2.0
      •3•2•3•0•Updated Apr 17, 2024Apr 17, 2024

    • reana-demo-bsm-search

      Public
      REANA example - BSM search
      Python
      •
      MIT License
      •35•0•0•0•Updated Apr 6, 2024Apr 6, 2024

    • run-conformance-tests

      Public
      Action for running CWL conformance tests
      common-workflow-languagecwlcommonwl
      Apache License 2.0
      •0•0•0•0•Updated Apr 6, 2024Apr 6, 2024

    • run-tests

      Public
      Action for running tests for CWL workflows
      testingcommon-workflow-languagecwlcommonwl
      Apache License 2.0
      •0•1•0•0•Updated Mar 29, 2024Mar 29, 2024

    • schema-salad-ts-auto

      Public
      Autogenerated TypeScript bindings for Schema SALAD documents
      TypeScript
      •
      Apache License 2.0
      •0•0•0•0•Updated Oct 5, 2022Oct 5, 2022

    • CWLDotNet

      Public
      Autogenerated .Net bindings for CWL
      C#
      •
      Apache License 2.0
      •0•2•1•0•Updated Jun 28, 2022Jun 28, 2022

    • cwl-language-server

      Public
      A Language Server for CWL
      language-servercommon-workflow-languagecwlcommonwl
      Python
      •
      Apache License 2.0
      •2•3•2•1•Updated Jun 3, 2022Jun 3, 2022

    • CW22_CWL_Novice_Exercises

      Public template
      CWL Novice Exercises for the Collaborations Workshop 2022
      HTML
      •
      Apache License 2.0
      •1•1•0•0•Updated Apr 5, 2022Apr 5, 2022

    • cwl-novice-tutorial-data

      Public template
      Apache License 2.0
      •1•1•0•0•Updated Mar 16, 2022Mar 16, 2022

    • cwl-argo-misc

      Public
      Examples of CWL descriptions converted to Argo
      Apache License 2.0
      •0•1•1•0•Updated Jan 10, 2022Jan 10, 2022

    • cwl-intermediate-tutorial

      Public
      HTML
      •
      Other
      •3•2•3•1•Updated Dec 3, 2021Dec 3, 2021

    • wdl2cwl

      Public archive
      [Experimental] Workflow Definition Language (WDL) to CWL
      wdlcwlcommonwlwdl-workflow
      Python
      •
      Apache License 2.0
      •4•28•2•0•Updated Nov 17, 2021Nov 17, 2021

    • .github

      Public
      Apache License 2.0
      •0•0•0•0•Updated Nov 3, 2021Nov 3, 2021

    • cwl_rna_seq

      Public
      A very basic CWL RNA-Seq workflow using Kallisto
      Common Workflow Language
      •
      MIT License
      •1•0•0•0•Updated Oct 1, 2021Oct 1, 2021

    • cwl-novice-tutorial

      Public archive
      Placeholder repo for redirects to https://github.com/carpentries-incubator/cwl-novice-tutorial
      0•0•0•0•Updated Apr 26, 2021Apr 26, 2021

    • cwl-advanced-training

      Public
      Common Workflow Language
      •0•1•0•0•Updated Mar 3, 2021Mar 3, 2021

    • cwl2script

      Public
      Compile CWL workflow to shell script
      Python
      •5•10•1•0•Updated Oct 23, 2020Oct 23, 2020

    • 2020-works-workshop-mpi-cwl

      Public
      TeX
      •0•0•0•0•Updated Oct 20, 2020Oct 20, 2020

    • avro

      Public archive
      Mirror of Apache Avro
      Java
      •
      Apache License 2.0
      •1.7k•0•0•1•Updated Aug 11, 2020Aug 11, 2020

    • make2cwl

      Public
      Sketch of a GNU Make to CWL converter
      Apache License 2.0
      •0•0•2•0•Updated Jul 2, 2020Jul 2, 2020

    • python-cwlgen

      Public archive
      Generation of CWL programmatically. Available types: CommandLineTool and DockerRequirement
      Python
      •
      MIT License
      •12•30•0•0•Updated Jun 9, 2020Jun 9, 2020

    • lwcwl

      Public archive
      Lightweight CWL
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Apr 28, 2020Apr 28, 2020